MED3007: Statistical Principles in Genomics

Welcome!

This is the course website for MED3007: Statistical Principles in Genomics at the Faculty of Medicine, University of Oslo.

The course website is developed by the instructors of the course, hosted for free and public accessible on Github. Course material can be found in the github repository.

Structure

  • Get Started provides some information about software installation, data download and code.
  • R Lab and Code hosts the lab session exercises and code.
Official course webpage

Please refer to the official course page by University of Oslo for information related to application, evaluation and other administrative matters.

Preparation before the course starts

You should have R installed on your computer before the course. More on preparation please read here.

If you have trouble setting it up with your own laptop, you can also use the PC in the PC lab.

Schedule

You can find the time and place on the official course schedule at the University of Oslo course website.

If there is a conflict of information, please refer to the official schedule.

Day 1

Time Topic Course material
9:00 - 9:45 Introduction to the course Lecture
10:00 - 11:30 Lab: Introduction to R and Rstudio Lab: intro to R, Presentation (V24), Code
13:00 - 14:00 Data screening and multiple testing Lecture
14:00 - 16:00 Q&A

Day 2

Time Topic Course material
9:00 - 9:45 Lab: Data screening and multiple testing
10:00 - 11:30 Exercises Lab: multiple testing, Code, Code (solution)
13:00 - 14:00 Data visualization, dimensional reduction Lecture
14:00 - 16:00 Q&A

Day 3

Time Topic Course material
9:00 - 9:45 Lab: Data visualization, dimensional reduction Presentation (V24)
10:00 - 11:30 Exercises Lab: PCA, Code
13:00 - 14:00 Clustering Lecture
14:00 - 16:00 Q&A

Day 4

Time Topic Course material
9:00 - 9:45 Lab: Clustering and heatmaps Presentation (V24)
10:00 - 11:30 Exercises Lab: clustering, Code
13:00 - 14:00 Take-home exam simulation Exam material
14:00 - 16:00 Q&A

Papers