Download datasets here, or from Canvas.
day 2 (Multiple testing)
day 3 (PCA)
day 4 (clustering)
| Day | Lab notes | R script | Presentation |
|---|---|---|---|
| Day 1 | Day 1: Introduction to R | Code | Slides |
| (supplement): Navigate RStudio and workspace | |||
| Day 2 | Day 2: Multiple testing | Code, Code (solution) | |
| Day 3 | Day 3: Principal Component Analysis | Code | Slides |
| Day 4 | Day 4: Clustering | Code | Slides |
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title: "R Lab: Overview"
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## Datasets
Download datasets [here](https://github.com/ocbe-uio/course_med3007/tree/main/lab/data), or from Canvas.
day 2 (Multiple testing)
- brainshake
- NCI60
- Ch10Ex11
day 3 (PCA)
- Food
- NCI60
- CH12Ex13
day 4 (clustering)
- NCI60
- CH12Ex13
## Lab notes and R scripts
| Day | Lab notes | R script | Presentation |
|:-------------:|:------------------------------------:|:-----------------:|:-----------------:
| Day 1 | [Day 1: Introduction to R](lab_day1_intro.qmd) | [Code](https://github.com/ocbe-uio/course_med3007/blob/main/lab/code/MED3007_Lab0_intro_r.R) |[Slides](presentation/Lab_IntroR.pdf) |
| | [(supplement): Navigate RStudio and workspace](lab_day1s_rstudio.qmd) | | |
| Day 2 | [Day 2: Multiple testing](lab_day2_testing.qmd) | [Code](https://github.com/ocbe-uio/course_med3007/blob/main/lab/code/MED3007_Lab1.R), [Code (solution)](https://github.com/ocbe-uio/course_med3007/blob/main/lab/code/MED3007_Lab1_exercise_solution.R) | |
| Day 3 | [Day 3: Principal Component Analysis](lab_day3_pca.qmd) |[Code](https://github.com/ocbe-uio/course_med3007/blob/main/lab/code/MED3007_Lab2_pca.R) | [Slides](presentation/Lab_pca.pdf)
|
| Day 4 | [Day 4: Clustering](lab_day4_clustering.qmd) |[Code](https://github.com/ocbe-uio/course_med3007/blob/main/lab/code/MED3007_Lab3_clustering.R) | [Slides](presentation/Lab_clustering.pdf)|